805 research outputs found
Mean-field approximation to a spatial host-pathogen model
We study the mean-field approximation to a simple spatial host-pathogen model that has been shown to display interesting evolutionary properties. We show that previous derivations of the mean-field equations for this model are actually only low-density approximations to the true mean-field limit. We derive the correct equations and the corresponding equations including pair correlations. The process of invasion by a mutant type of pathogen is also discussed.674
Fast flowing populations are not well mixed
In evolutionary dynamics, well-mixed populations are almost always associated
with all-to-all interactions; mathematical models are based on complete graphs.
In most cases, these models do not predict fixation probabilities in groups of
individuals mixed by flows. We propose an analytical description in the
fast-flow limit. This approach is valid for processes with global and local
selection, and accurately predicts the suppression of selection as competition
becomes more local. It provides a modelling tool for biological or social
systems with individuals in motion.Comment: 19 pages, 8 figure
What is Quantum? Unifying Its Micro-Physical and Structural Appearance
We can recognize two modes in which 'quantum appears' in macro domains: (i) a
'micro-physical appearance', where quantum laws are assumed to be universal and
they are transferred from the micro to the macro level if suitable 'quantum
coherence' conditions (e.g., very low temperatures) are realized, (ii) a
'structural appearance', where no hypothesis is made on the validity of quantum
laws at a micro level, while genuine quantum aspects are detected at a
structural-modeling level. In this paper, we inquire into the connections
between the two appearances. We put forward the explanatory hypothesis that,
'the appearance of quantum in both cases' is due to 'the existence of a
specific form of organisation, which has the capacity to cope with random
perturbations that would destroy this organisation when not coped with'. We
analyse how 'organisation of matter', 'organisation of life', and 'organisation
of culture', play this role each in their specific domain of application, point
out the importance of evolution in this respect, and put forward how our
analysis sheds new light on 'what quantum is'.Comment: 10 page
Limited role of spatial selfstructuring in emergent trade-offs during pathogen evolution
Pathogen transmission and virulence are main evolutionary variables broadly assumed to be linked
through trade-offs. In well-mixed populations, these trade-offs are often ascribed to physiological
restrictions, while populations with spatial self-structuring might evolve emergent trade-offs. Here,
we reexamine a spatially-explicit, SIR model of the latter kind proposed by Ballegooijen and Boerlijst
with the aim of characterising the mechanisms causing the emergence of the trade-off and its structural
robustness. Using invadability criteria, we establish the conditions under which an evolutionary
feedback between transmission and virulence mediated by pattern formation can poise the system to
a critical boundary separating a disordered state (without emergent trade-off) from a self-structured
phase (where the trade-off emerges), and analytically calculate the functional shape of the boundary
in a certain approximation. Beyond evolutionary parameters, the success of an invasion depends
on the size and spatial structure of the invading and invaded populations. Spatial self-structuring is
often destroyed when hosts are mobile, changing the evolutionary dynamics to those of a well-mixed
population. In a metapopulation scenario, the systematic extinction of the pathogen in the disordered
phase may counteract the disruptive effect of host mobility, favour pattern formation and therefore
recover the emergent trade-off.This work has been supported by the Spanish Ministerio de Economía, Industria y Competitividad and FEDER
funds of the EU through grants ViralESS (FIS2014-57686-P and FIS2017-84256-P). The internship of VB was
financed by the Severo Ochoa Centers of Excellence Program (SEV-2013-0347)
Emergent complex neural dynamics
A large repertoire of spatiotemporal activity patterns in the brain is the
basis for adaptive behaviour. Understanding the mechanism by which the brain's
hundred billion neurons and hundred trillion synapses manage to produce such a
range of cortical configurations in a flexible manner remains a fundamental
problem in neuroscience. One plausible solution is the involvement of universal
mechanisms of emergent complex phenomena evident in dynamical systems poised
near a critical point of a second-order phase transition. We review recent
theoretical and empirical results supporting the notion that the brain is
naturally poised near criticality, as well as its implications for better
understanding of the brain
Effect of hydrocephalus on rat brain extracellular compartment
<p>Abstract</p> <p>Background</p> <p>The cerebral cortex may be compressed in hydrocephalus and some experiments suggest that movement of extracellular substances through the cortex is impaired. We hypothesized that the extracellular compartment is reduced in size and that the composition of the extracellular compartment changes in rat brains with kaolin-induced hydrocephalus.</p> <p>Methods</p> <p>We studied neonatal (newborn) onset hydrocephalus for 1 or 3 weeks, juvenile (3 weeks) onset hydrocephalus for 3–4 weeks or 9 months, and young adult (10 weeks) onset hydrocephalus for 2 weeks, after kaolin injection. Freeze substitution electron microscopy was used to measure the size of the extracellular compartment. Western blotting and immunohistochemistry with quantitative image densitometry was used to study the extracellular matrix constituents, phosphacan, neurocan, NG2, decorin, biglycan, and laminin.</p> <p>Results</p> <p>The extracellular space in cortical layer 1 was reduced significantly from 16.5 to 9.6% in adult rats with 2 weeks duration hydrocephalus. Western blot and immunohistochemistry showed that neurocan increased only in the periventricular white matter following neonatal induction and 3 weeks duration hydrocephalus. The same rats showed mild decorin increases in white matter and around cortical neurons. Juvenile and adult onset hydrocephalus was associated with no significant changes.</p> <p>Conclusion</p> <p>We conclude that compositional changes in the extracellular compartment are negligible in cerebral cortex of hydrocephalic rats at various ages. Therefore, the functional change related to extracellular fluid flow should be reversible.</p
The Relationship Between Lower Limb Bone and Muscle in Military Recruits, Response to Physical Training, and Influence of Smoking Status
The relationship between bone and skeletal muscle mass may be affected by physical training. No studies have prospectively examined the bone and skeletal muscle responses to a short controlled exercise-training programme. We hypothesised that a short exercise-training period would affect muscle and bone mass together
Impact of IL-28B polymorphisms on pegylated interferon plus ribavirin treatment response in children and adolescents infected with HCV genotypes 1 and 4
IL-28B polymorphisms are predictors of response to therapy in adults infected with hepatitis C. We do not know whether they are markers of response to therapy in children and adolescents. The aim of this study was to determine whether single-nucleotide polymorphisms (SNPs) in the IL-28B gene could influence the probability of response to therapy compared with other known baseline prognostic factors and correlate with clinical findings in pediatric patients infected with hepatitis C virus (HCV) genotypes 1 or 4. We determined three SNPs of IL-28B (rs12979860, rs12980275, and rs8099917) in 82 patients with chronic HCV infection treated with pegylated interferon alpha and ribavirin (peg-IFNα/RBV). Treatment response and clinical data were analyzed. Overall, sustained virological response (SVR) was achieved by 45 % of patients infected with difficult-to-treat HCV genotypes 1 and 4. Except for IL-28B polymorphisms, there was no association of SVR with any other clinical data. IL-28B rs12979860 CC [odds ratio (OR), 6.81; p = 0.001] and rs8099917 TT (OR, 3.14; p = 0.013) genotypes were associated with higher SVR rates. IL-28B rs12980275 was not significantly associated with SVR ( p = 0.058). Only the distribution between CC and CT-TT genotypes of rs12979860 significantly differentiated patients achieving early virological response (EVR) (OR, 10.0; p = 0.011). Children with the rs12979860 CC genotype had significantly higher baseline viral load compared with CT-TT patients ( p = 0.010). In children and adolescents chronically infected with HCV genotypes 1 and 4, IL-28B rs12979860 and rs8099917 polymorphisms were the only predictors of response to peg-IFN/RBV
Evolutionary and pulsational properties of white dwarf stars
Abridged. White dwarf stars are the final evolutionary stage of the vast
majority of stars, including our Sun. The study of white dwarfs has potential
applications to different fields of astrophysics. In particular, they can be
used as independent reliable cosmic clocks, and can also provide valuable
information about the fundamental parameters of a wide variety of stellar
populations, like our Galaxy and open and globular clusters. In addition, the
high densities and temperatures characterizing white dwarfs allow to use these
stars as cosmic laboratories for studying physical processes under extreme
conditions that cannot be achieved in terrestrial laboratories. They can be
used to constrain fundamental properties of elementary particles such as axions
and neutrinos, and to study problems related to the variation of fundamental
constants.
In this work, we review the essentials of the physics of white dwarf stars.
Special emphasis is placed on the physical processes that lead to the formation
of white dwarfs as well as on the different energy sources and processes
responsible for chemical abundance changes that occur along their evolution.
Moreover, in the course of their lives, white dwarfs cross different
pulsational instability strips. The existence of these instability strips
provides astronomers with an unique opportunity to peer into their internal
structure that would otherwise remain hidden from observers. We will show that
this allows to measure with unprecedented precision the stellar masses and to
infer their envelope thicknesses, to probe the core chemical stratification,
and to detect rotation rates and magnetic fields. Consequently, in this work,
we also review the pulsational properties of white dwarfs and the most recent
applications of white dwarf asteroseismology.Comment: 85 pages, 28 figures. To be published in The Astronomy and
Astrophysics Revie
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